Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2490964 chr13:114159903 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2490965 chr13:114160392 T/G 4.56E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs2490966 chr13:114160439 G/A 4.56E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs2490967 chr13:114161382 C/T 3.87E-12 178 3.32 29.5 24.17 KM Plot
PCPG rs2490968 chr13:114162283 G/C 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2490969 chr13:114162310 A/G 3.87E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs2490970 chr13:114162347 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2490972 chr13:114163848 A/G 5.41E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2490973 chr13:114163986 C/T 3.87E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2490974 chr13:114164031 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2490975 chr13:114164277 C/T 3.87E-12 178 3.32 29.95 24.17 KM Plot
PCPG rs2490976 chr13:114164380 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2490977 chr13:114164401 G/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2490978 chr13:114164410 A/G 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2490979 chr13:114166070 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot